
   25-Oct-2021 15:50:21 +0200

rootdir = Y:\Biophysics\Experiments\dRT-DC\211019_Faruq_2Wildbats\
sampleName = bat2_8nlps_Cold
measNums = 1 2 3 4 5 
frameNums = 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
Converting 'M1_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2323 cell sequences
cell traces covers the whole channel: 1161 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 56
write results (1105 cells):
----------
----------
1105 cells written
Converting 'M2_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2520 cell sequences
cell traces covers the whole channel: 1283 cell sequences
load video
Error using <a href="matlab:matlab.internal.language.introspective.errorDocCallback('VideoReader/init', 'C:\Program Files\MATLAB\R2018b\toolbox\matlab\audiovideo\@VideoReader\VideoReader.m', 611)" style="font-weight:bold">VideoReader/init</a> (<a href="matlab: opentoline('C:\Program Files\MATLAB\R2018b\toolbox\matlab\audiovideo\@VideoReader\VideoReader.m',611,0)">line 611</a>)
Unable to determine the codec required.

Error in <a href="matlab:matlab.internal.language.introspective.errorDocCallback('VideoReader', 'C:\Program Files\MATLAB\R2018b\toolbox\matlab\audiovideo\@VideoReader\VideoReader.m', 176)" style="font-weight:bold">VideoReader</a> (<a href="matlab: opentoline('C:\Program Files\MATLAB\R2018b\toolbox\matlab\audiovideo\@VideoReader\VideoReader.m',176,0)">line 176</a>)
            obj.init(fileName);

Error in <a href="matlab:matlab.internal.language.introspective.errorDocCallback('CellPosDeformEval43', 'D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\CellPosDeformEval43.m', 173)" style="font-weight:bold">CellPosDeformEval43</a> (<a href="matlab: opentoline('D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\CellPosDeformEval43.m',173,0)">line 173</a>)
    vr = VideoReader([filedir fileAvi.name]);

Error in <a href="matlab:matlab.internal.language.introspective.errorDocCallback('aa_cellTrackAnalysis', 'D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\aa_cellTrackAnalysis.m', 16)" style="font-weight:bold">aa_cellTrackAnalysis</a> (<a href="matlab: opentoline('D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\aa_cellTrackAnalysis.m',16,0)">line 16</a>)
CellPosDeformEval43


   24-Nov-2021 16:17:43 +0100

rootdir = Y:\Biophysics\Experiments\dRT-DC\211019_Faruq_2Wildbats\
sampleName = bat2_8nlps_Cold
measNums = 1 2 3 4 5 
frameNums = 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
Converting 'M1_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2323 cell sequences
cell traces covers the whole channel: 1161 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 56
write results (1105 cells):
----------
----------
1105 cells written
Converting 'M2_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2520 cell sequences
cell traces covers the whole channel: 1283 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 58
write results (1225 cells):
----------
----------
1225 cells written
Converting 'M3_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2562 cell sequences
cell traces covers the whole channel: 1266 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 71
write results (1195 cells):
----------
----------
1195 cells written
Converting 'M4_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2606 cell sequences
cell traces covers the whole channel: 1271 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 71
write results (1200 cells):
----------
----------
1200 cells written
Converting 'M5_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2720 cell sequences
cell traces covers the whole channel: 1337 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 68
write results (1269 cells):
----------
----------
1269 cells written
measurement: Y:\Biophysics\Experiments\dRT-DC\211019_Faruq_2Wildbats\bat2_8nlps_Cold\Online\
cell counts:
M#	Th	wholeChannel	areaRatio	written
1	2323	1161	1105	1105
2	2520	1283	1225	1225
3	2562	1266	1195	1195
4	2606	1271	1200	1200
5	2720	1337	1269	1269

   4-Mar-2022 15:45:31 +0100

rootdir = ..\211019_Faruq_2wildbats\
sampleName = 211019_Bat2_8nlps_Cold
measNums = 1 2 3 4 5 
frameNums = 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
Converting 'M1_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2323 cell sequences
cell traces covers the whole channel: 1153 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 56
write results (1097 cells):
----------
----------
1097 cells written
Converting 'M2_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2520 cell sequences
cell traces covers the whole channel: 1283 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 58
write results (1225 cells):
----------
----------
1225 cells written
Converting 'M3_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2562 cell sequences
cell traces covers the whole channel: 1264 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 71
write results (1193 cells):
----------
----------
1193 cells written
Converting 'M4_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2606 cell sequences
cell traces covers the whole channel: 1278 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 71
write results (1207 cells):
----------
----------
1207 cells written
Converting 'M5_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2720 cell sequences
cell traces covers the whole channel: 1336 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 68
write results (1268 cells):
----------
----------
1268 cells written
measurement: ..\211019_Faruq_2wildbats\211019_Bat2_8nlps_Cold\Online\
cell counts:
M#	Th	wholeChannel	areaRatio	written
1	2323	1153	1097	1097
2	2520	1283	1225	1225
3	2562	1264	1193	1193
4	2606	1278	1207	1207
5	2720	1336	1268	1268
